PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024553.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CAMTA
Protein Properties Length: 1073aa    MW: 119993 Da    PI: 5.7904
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024553.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.51.3e-53211382118
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 lke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+een +fqrr+y
  Do024553.1  21 LKEaQHRWLRPTEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEENINFQRRTY 119
                 45559********************************************************************************************** PP

        CG-1 100 wlLeeelekivlvhylevk 118
                 w+Lee++ +ivlvhyle+k
  Do024553.1 120 WMLEEDFMHIVLVHYLETK 138
                 ****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3217143IPR005559CG-1 DNA-binding domain
SMARTSM010765.4E-7120138IPR005559CG-1 DNA-binding domain
PfamPF038595.0E-4823136IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.6E-16495581IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.107.1E-5495581IPR013783Immunoglobulin-like fold
PfamPF018334.4E-6497573IPR002909IPT domain
Gene3DG3DSA:1.25.40.208.1E-16687791IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.12E-15688789IPR020683Ankyrin repeat-containing domain
CDDcd002041.54E-11690787No hitNo description
PROSITE profilePS500888.603696728IPR002110Ankyrin repeat
PROSITE profilePS5029715.884696761IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.763729761IPR002110Ankyrin repeat
SMARTSM002480.0085729758IPR002110Ankyrin repeat
SuperFamilySSF525401.35E-8889941IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.086890912IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407891920IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034892911IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022913935IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56914938IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4916935IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1073 aa     Download sequence    Send to blast
MASAEARRLA VVPQLDIEQI LKEAQHRWLR PTEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSSRARVNNN MIQEAAVDSP LSQLPSQTIE GESSLSGQAS  180
EYEEAESADI YSGGAGYHSF ARMQQHENGT GPVIDSSVFN SYTPASSIGN YQGLHAMTQN  240
TNFYPGNQHN SPLVLSGSST VVAMNGRANQ TDLSSWNPVI ELDNGPVQMP HLQFPVPPEQ  300
GTSTEGLGID YLTFDEVYSD GLSLKDIGAA GADGESFWQV CWSAIPYNYT YEICYRIHDS  360
MDLYNIMALH CFLKRHLTEF VAFQFTSATG DSSTTENSFL RPNDGSLEAA IGNPFLKTQS  420
SNLSDILKDS FKKTDSFTRW MSKELPEVED SQIQSSSGVY WSTEEADSII EASSREPLDQ  480
FTVSPMLSQD QLFSIVDFAP CWTYVGSKTK ILVTGSILNN SQDTERCKWS CMFGEVEVPA  540
KILPDGTLIC YSPLHKPGRV PFYITCSNRL ACSEVREFEF RPTVTPYMDA PSPHGATNKV  600
YFQIRLDKLL SLGPDEYQAT VSNPSLEMIE LSKKISSLMM SNDEWSNLLK LAVDNEPSTD  660
DQQDQFAEKL IKDKLHVWLL NKVGVGGKGP SVLDDEGQGV LHLAAALGYD WAIRPTLAAG  720
VNINFRDIHG WTALHWAAFC GRERTVVALI TLGAAPGALT DPSPDFPETT PADLASANGQ  780
KGISGFLAES SLTSHLQALN LKEANMAEIS GLPGIGDVTE RDSLQPPIGD SLGPVRNAAQ  840
AAARIYQVFR VQSFQRKEAA KYEDGKGGMS DERALSLLSV KPSKPGQLDP LHSAATRIQN  900
KFRGWKGRKE FLLIRQRIVK IQAHVRGHQV RKHYRKIVWS VGIVEKVILR WRRRGAGLRG  960
FRSSEGSAEG SSGGTSSSLL QDKPSRDDYD FLQEGRKQTE ERLQKALARV KSMAQYPEAR  1020
DQYQRILTVV SKMQESQAMQ EKMLEESAEM DDSYFMNELQ ELWDDDTPIP GYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983217.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLK4A5920.0K4A592_SETIT; Uncharacterized protein
STRINGSi034046m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1